MeMoRe documentation

MeMoRe stand for Methylation Motif Refiner. This is a tool designed to validate and, if necessary, refine methylation motifs detected from Bacteria and Archaea with SMRT and ONT sequencing.

Authors’ notes

We are actively developing MeMoRe to facilitate usage and broaden features. All feedback is more than welcome. You can reach us on twitter (@iamfanggang and @AlanTourancheau) or directly through the GitHub issues system.

Usage

To run MeMoRe on your own dataset or use our testing dataset please follow: https://fanglab-tools.shinyapps.io/MeMoRe/. MeMoRe is designed to be user friendly and therefore is distributed as a Shiny application through shinyapps.io hosting solution, no installation needed.

Contents

• Overview
  • Authors’ notes
  • Usage
  • Tool showcase
  • Citation
• Tool showcase
  • Principle
  • Analysis of SMRT results
  • Analysis of ONT results
  • Detailed tutorial
• Detailed tutorial
  • 1. Analytical principle
  • 2. Analysis of SMRT results
  • 3. Analysis of ONT results
• Data requirement
  • SMRT analysis
  • ONT analysis
• FAQ
• Citation

Contribute

• Download source code

• Report issue

Search

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